Package: GIMP Title: Genomic Imprinting Methylation Patterns Version: 0.2.0 Authors@R: c( person(given = "Abu", family = "Saadat", role = c("cre", "aut"), email = "saadatabu1996@gmail.com"), person(given = "Francesco", family = "Cecere", role = "aut", email = "francesco.cecerengs@gmail.com")) Description: A package for analyzing Imprinting Control Regions (ICRs) DNA methylation. Supports both processed methylation data and raw IDAT files from Illumina arrays. Provides specialized tools for imprinting analysis including defect detection and interactive visualizations. License: GPL-3 Encoding: UTF-8 URL: https://github.com/SAADAT-Abu/GIMP BugReports: https://github.com/SAADAT-Abu/GIMP/issues LazyData: false LazyDataCompression: xz RoxygenNote: 7.3.3 Depends: R (>= 4.4.0) Imports: shiny, shinydashboard, DT, plotly, minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b4.hg19, IlluminaHumanMethylationEPICv2anno.20a1.hg38, IlluminaHumanMethylationEPICmanifest, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICv2manifest, tools, utils, stats, valr, reshape2, ggplot2, pheatmap, viridisLite, ggplotify, readr, BiocManager, R.utils, Biobase, GEOquery, limma, tibble, dplyr, tidyr, BiocParallel, readxl, doParallel, BiocGenerics Suggests: knitr, rmarkdown, testthat, AnnotationHub VignetteBuilder: knitr biocViews: DNAMethylation, Microarray, Preprocessing, QualityControl, DifferentialMethylation, Epigenetics, MethylationArray NeedsCompilation: no Packaged: 2026-10-08 11:27:32 UTC; root Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev Repository: https://saadat-abu.r-universe.dev Date/Publication: 2026-09-08 19:02:35 UTC RemoteUrl: https://github.com/SAADAT-Abu/GIMP RemoteRef: HEAD RemoteSha: b3c382574a5b27503bfa138a2033eb511ab9d903 Author: Abu Saadat [cre, aut], Francesco Cecere [aut] Maintainer: Abu Saadat