# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Capsule" in publications use:'
type: software
license: MIT
title: 'Capsule: Comprehensive Reproducibility Framework for R and Bioinformatics
  Analysis'
version: 0.2.0
doi: 10.32614/CRAN.package.Capsule
abstract: A comprehensive reproducibility framework designed for R and bioinformatics
  workflows. Automatically captures the entire analysis environment including R session
  info, package versions, external tool versions (Samtools, STAR, BWA, etc.), conda
  environments, reference genomes, data provenance with smart checksumming for large
  files, parameter choices, random seeds, and hardware specifications. Generates executable
  scripts with Docker, Singularity, and renv configurations. Integrates with workflow
  managers (Nextflow, Snakemake, WDL, CWL) to ensure complete reproducibility of computational
  research workflows.
authors:
- family-names: SAADAT
  given-names: Abu
  email: saadatabu1996@gmail.com
  orcid: https://orcid.org/0000-0001-9636-2513
  affiliation: Università degli Studi della Campania Luigi Vanvitelli
repository: https://saadat-abu.r-universe.dev
repository-code: https://github.com/SAADAT-Abu/Capsule
commit: 5d47c2cde3de3093a4aeff7d81c2bec84666ce31
url: https://github.com/SAADAT-Abu/Capsule
date-released: '2025-12-28'
contact:
- family-names: SAADAT
  given-names: Abu
  email: saadatabu1996@gmail.com
  orcid: https://orcid.org/0000-0001-9636-2513
  affiliation: Università degli Studi della Campania Luigi Vanvitelli